Last updated: 2021-02-19
Checks: 2 0
Knit directory: 2021_UoM_Yap_shRNA_nuclei_RNAseq_ATACseq/
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Untracked files:
Untracked: Mus_musculus.GRCm38.96.fulllength.saf
Untracked: header.txt
Untracked: mouseATAC*bed.saf
Untracked: mouseATAC*bed.saf.pe.mx
Untracked: mouseATAC*bed.saf.pe.mx.chr
Untracked: mouseATAC*bed.saf.pe.mx.fix
Untracked: output/YAP_shRNA_D28_Proteomics_results.xls
Untracked: output/edgeR_atac_cov2_LacZvsYap.xls
Untracked: output/edgeR_rna_LacZvsYap.xls
Untracked: output/logCPM_mrna_fulllen_pe_strrev.mx.fix_filt.csv
Untracked: output/mouse2human.txt.sort
Untracked: output/mouseATAC_peaks_cov2.bed.saf.pe.mx.fix_filt
Untracked: output/mrna_fulllen_pe_strrev.mx.fix_filt
Untracked: output/pheno.matrix.txt
Untracked: output/pheno.matrix_cov2.txt
Untracked: output/sampleinfo.txt
Unstaged changes:
Modified: README.md
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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (docs/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 704a4cf | evangelynsim | 2021-02-19 | wflow_publish(c(“analysis/01.RNAseq_primary_analysis.Rmd”, “analysis/02.RNAseq_QC_and_CPM.Rmd”, |
| Rmd | 16fb194 | evangelynsim | 2021-02-19 | Start workflowr project. |
The code in this analysis is covered by the MIT license and the written content on this website is covered by a Creative Commons CC-BY license.